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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs10654487 chr21:44405019 T/TGA 5.75E-6 192 2.7 13.85 13.57 KM Plot
LIHC rs1067216 chr1:21595553 A/T 1.66E-9 192 13.35 13.83 0.63 KM Plot
LIHC rs10699089 chr4:110758998 C/CTCGG 7.48E-5 183 3.87 13.13 13.78 KM Plot
LIHC rs10753465 chr1:224570982 C/G 0.000432 192 13.58 13.37 2.4 KM Plot
LIHC rs10753466 chr1:224583926 T/C 1.5E-6 190 2.4 13.85 13.55 KM Plot
LIHC rs10753467 chr1:224639577 C/T 1.52E-6 191 2.4 13.83 13.58 KM Plot
LIHC rs10758184 chr9:33084282 A/G 7.88E-5 192 12.53 16.33 10.17 KM Plot
LIHC rs10758185 chr9:33084384 C/T 0.000263 192 12.17 16.95 11.93 KM Plot
LIHC rs10786361 chr10:99408768 G/C 2.18E-5 190 12.43 14.23 2.7 KM Plot
LIHC rs10805130 chr4:44660570 C/T 0.000221 191 7.43 13.7 13.85 KM Plot
LIHC rs10807685 chr7:64450556 T/C 4.0E-12 192 1.77 5.7 13.97 KM Plot
LIHC rs10849974 chr12:112264158 C/T 6.38E-6 192 12.57 14.98 4.03 KM Plot
LIHC rs10849975 chr12:112264648 G/A 6.38E-6 192 12.57 14.98 4.03 KM Plot
LIHC rs10849981 chr12:112335217 A/T 2.24E-5 191 12.57 14.85 5.17 KM Plot
LIHC rs10849982 chr12:112335539 G/A 2.24E-5 191 12.57 14.85 5.17 KM Plot